Molecular modeling study on potent and selective adenosine A(3) receptor agonists

Bioorg Med Chem. 2010 Nov 15;18(22):7923-30. doi: 10.1016/j.bmc.2010.09.038. Epub 2010 Sep 22.

Abstract

Adenosine A(3) receptor (A(3)AR) is involved in a variety of key physio-pathological processes and its agonists are potential therapeutic agents for the treatment of rheumatoid arthritis, dry eye disorders, asthma, as anti-inflammatory agents, and in cancer therapy. Recently reported MECA (5'-N-methylcarboxamidoadenosine) derivatives bearing a methyl group in N(6)-position and an arylethynyl substituent in 2-position demonstrated to possess sub-nanomolar affinity and remarkable selectivity for the human A(3)AR, behaving as full agonists of this receptor. In this study, we made an attempt to get a rationalization of the high affinities and selectivities of these molecules for the human A(3)AR, by using adenosine receptor (AR) structural models based on the A(2A)AR crystal structure and molecular docking analysis. Post-docking analysis allowed to evaluate the ability of modeling tools in predicting AA(3)R affinity and in providing interpretation of compound substituents effect on the A(3)AR affinity and selectivity.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adenosine A3 Receptor Agonists / chemical synthesis
  • Adenosine A3 Receptor Agonists / chemistry*
  • Adenosine A3 Receptor Agonists / pharmacology
  • Amino Acid Sequence
  • Binding Sites
  • Computer Simulation
  • Humans
  • Ligands
  • Models, Molecular
  • Molecular Sequence Data
  • Protein Structure, Tertiary
  • Receptor, Adenosine A2A / chemistry
  • Receptor, Adenosine A3 / chemistry*
  • Receptor, Adenosine A3 / metabolism
  • Sequence Alignment

Substances

  • Adenosine A3 Receptor Agonists
  • Ligands
  • Receptor, Adenosine A2A
  • Receptor, Adenosine A3